STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG09573.1DNA-binding transcriptional regulator YhcF, GntR family. (118 aa)    
Predicted Functional Partners:
SMG09577.1
ABC-2 type transport system ATP-binding protein.
     0.973
SMG09581.1
Hypothetical protein.
 
     0.935
SMG49657.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.736
SMG24512.1
AraC-like ligand binding domain-containing protein; Manually curated.
   
    0.550
SMG09559.1
Uncharacterized protein.
       0.534
rpmF
LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.
       0.481
SMG11158.1
Transcriptional regulator, XRE family with cupin sensor.
  
    0.448
SMG28824.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.422
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
    
  0.407
SMG26355.1
Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase.
    
  0.404
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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