STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG09641.1NitT/TauT family transport system substrate-binding protein. (382 aa)    
Predicted Functional Partners:
SMG09750.1
NitT/TauT family transport system ATP-binding protein.
 
 
 0.980
SMG09714.1
NitT/TauT family transport system permease protein.
 
 
  0.976
SMG09752.1
NitT/TauT family transport system permease protein.
 
 
  0.976
infA
Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.934
SMG36772.1
Peptidylprolyl isomerase.
   
    0.934
SMG09758.1
Methylenetetrahydromethanopterin reductase.
 
 
  0.913
SMG08785.1
NitT/TauT family transport system permease protein.
 
 
  0.910
SMG08775.1
NitT/TauT family transport system ATP-binding protein.
 
 
 0.903
SMG49621.1
FMN reductase.
  
 
  0.853
SMG09774.1
Dihydropyrimidinase.
 
     0.814
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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