STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG10157.1Predicted metal-dependent hydrolase, TIM-barrel fold. (343 aa)    
Predicted Functional Partners:
SMG08755.1
Ferredoxin-NADP reductase.
 
  
  0.715
SMG45811.1
Phthalate 4,5-dioxygenase reductase subunit.
 
  
  0.706
SMG44449.1
Ferredoxin; Manually curated.
    
  0.662
SMG47923.1
NitT/TauT family transport system substrate-binding protein; Non-canonical start codon; manually curated.
  
     0.590
SMG44354.1
Mannose-6-phosphate isomerase, cupin superfamily.
    
  0.589
SMG38457.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
    
  0.573
SMG30224.1
HD domain-containing protein.
  
     0.542
SMG25370.1
Oxalate decarboxylase.
  
  
  0.536
SMG11524.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.531
SMG13383.1
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.531
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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