STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG19358.1Phytoene dehydrogenase-related protein. (527 aa)    
Predicted Functional Partners:
SMG27111.1
Phytoene/squalene synthetase.
  
 
 0.830
SMG27173.1
Phytoene desaturase.
  
 
 0.747
SMG19352.1
L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.671
SMG37354.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
  0.615
SMG07387.1
Dehydrogenase (flavoprotein).
 
 
 0.609
SMG19360.1
Hypothetical protein.
       0.508
menG
Demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
   
 
  0.405
SMG26249.1
Methyltransferase domain-containing protein.
   
 
  0.405
SMG41519.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
   
 
  0.405
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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