STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG20385.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
SMG20381.1
Glyoxylase, beta-lactamase superfamily II.
 
     0.933
SMG20374.1
DNA-binding transcriptional regulator, MarR family.
 
     0.713
SMG38039.1
Glutamate synthase (NADH) large subunit.
    
  0.557
SMG45333.1
Choline dehydrogenase.
    
  0.557
SMG26218.1
Phenazine biosynthesis protein PhzF family.
  
 
  0.443
SMG07110.1
Hypothetical protein.
     
 0.434
SMG13005.1
Succinate dehydrogenase subunit A.
     
 0.434
SMG19588.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  
  0.400
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.