STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG20601.1Transcriptional regulator, LacI family. (344 aa)    
Predicted Functional Partners:
SMG49924.1
Transcriptional regulator, LacI family.
  
     0.774
SMG19713.1
Transcriptional regulator, LacI family.
  
     0.773
SMG19728.1
Transcriptional regulator, LacI family.
  
     0.772
SMG19857.1
Transcriptional regulator, LacI family.
  
     0.768
SMG38039.1
Glutamate synthase (NADH) large subunit.
    
 
 0.668
SMG20593.1
Quinol monooxygenase YgiN.
       0.554
SMG20613.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
    
  0.545
SMG20623.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
    
  0.544
SMG20607.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.519
ribA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
    
   0.443
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.