STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG25134.1Protein of unknown function. (516 aa)    
Predicted Functional Partners:
SMG20359.1
alpha-L-fucosidase 2.
  
 
  0.747
SMG30078.1
Hypothetical protein.
  
 
  0.717
SMG40508.1
Hypothetical protein.
   
  0.667
SMG19735.1
alpha-L-rhamnosidase.
 
 
  0.663
SMG19618.1
alpha-L-rhamnosidase.
 
 
  0.661
SMG18984.1
alpha-L-rhamnosidase.
 
 
  0.657
SMG19014.1
Beta-glucosidase.
  
  
  0.592
SMG25122.1
Gluconate kinase, SKI family.
       0.545
SMG25128.1
Quinol monooxygenase YgiN.
       0.545
SMG38710.1
Lysophospholipase L1.
  
 
  0.537
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.