STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG27202.14-hydroxybenzoate polyprenyltransferase. (286 aa)    
Predicted Functional Partners:
SMG27179.1
Lycopene cyclase domain-containing protein.
 
 
 0.996
SMG27185.1
Lycopene cyclase domain-containing protein.
 
  
 0.994
SMG27111.1
Phytoene/squalene synthetase.
 
 
 0.981
SMG27173.1
Phytoene desaturase.
 
 
 0.980
SMG27098.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
 
 0.978
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 
 0.975
SMG49482.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
  
 
 0.801
SMG07387.1
Dehydrogenase (flavoprotein).
 
 
 0.676
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.621
SMG36468.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
  
  0.567
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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