STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG29926.1Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)    
Predicted Functional Partners:
SMG29969.1
Alkyldihydroxyacetonephosphate synthase.
 
  
  0.901
SMG38039.1
Glutamate synthase (NADH) large subunit.
    
  0.845
SMG29957.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
     0.841
SMG29912.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
 
  
 0.820
SMG29982.1
Inner membrane transporter RhtA.
       0.773
SMG24275.1
Urea carboxylase.
     
 0.583
SMG29919.1
Hypothetical protein.
       0.554
SMG24110.1
Nicotinamidase-related amidase.
   
 
  0.551
SMG29906.1
Hypothetical protein.
       0.537
SMG07426.1
Isopalmitoylresorcinol synthase.
    
  0.512
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.