STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG30133.1Hypothetical protein. (177 aa)    
Predicted Functional Partners:
SMG30125.1
Hypothetical protein.
       0.779
SMG31896.1
LytR cell envelope-related transcriptional attenuator.
  
     0.699
SMG47508.1
Uncharacterized membrane protein.
  
     0.678
SMG48535.1
Hypothetical protein.
  
     0.653
SMG41630.1
Hypothetical protein.
  
     0.633
SMG45669.1
Uncharacterized membrane protein HdeD, DUF308 family.
  
     0.614
SMG29475.1
Protein of unknown function.
  
     0.594
SMG30140.1
Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
 
     0.590
SMG43795.1
Hypothetical protein.
  
     0.582
SMG27990.1
TIGR04222 domain-containing protein.
  
     0.578
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.