STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG32007.1Protein of unknown function. (239 aa)    
Predicted Functional Partners:
SMG32005.1
Cold-shock DNA-binding protein family.
       0.836
SMG31998.1
Helicase conserved C-terminal domain-containing protein.
 
     0.728
SMG31419.1
Hypothetical protein.
  
     0.648
SMG32002.1
Hypothetical protein.
       0.571
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.563
SMG31992.1
DNA excision repair protein ERCC-3.
       0.544
SMG13461.1
DNA polymerase III, delta prime subunit.
  
     0.504
SMG37226.1
Protein of unknown function.
  
     0.497
SMG34531.1
Protein of unknown function.
  
     0.473
SMG38784.1
tRNA (adenine-58-N(1)-) methyltransferase.
  
     0.473
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.