STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG35429.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG. (262 aa)    
Predicted Functional Partners:
SMG27562.1
L-threonine aldolase.
 
  
  0.830
SMG09849.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
    
  0.728
SMG24275.1
Urea carboxylase.
  
 
  0.723
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
 
      0.629
SMG27554.1
Nitroreductase family protein.
    
  0.620
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
 
      0.617
SMG24416.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.547
SMG19352.1
L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
    0.546
SMG26573.1
L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
    0.546
SMG35420.1
Fucose 4-O-acetylase.
       0.539
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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