STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG40384.1Putative ABC transport system permease protein. (892 aa)    
Predicted Functional Partners:
SMG40381.1
ABC-type lipoprotein export system, ATPase component.
 
  0.981
SMG40392.1
FtsX-like permease family protein.
 
     0.958
SMG40375.1
Putative ABC transport system ATP-binding protein.
 
  0.947
SMG26295.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
  
 0.861
SMG40369.1
ATP-dependent helicase HrpA.
       0.757
SMG10968.1
LPXTG-motif cell wall anchor domain-containing protein.
  
 0.746
SMG40328.1
Pyridoxamine 5'-phosphate oxidase.
       0.741
SMG40365.1
Predicted arabinose efflux permease, MFS family.
       0.741
SMG26292.1
Putative ABC transport system ATP-binding protein.
   
  0.691
SMG34582.1
Putative ABC transport system ATP-binding protein.
   
  0.691
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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