STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG40884.1Transcriptional regulator, TetR family. (209 aa)    
Predicted Functional Partners:
SMG18586.1
Transcriptional regulator, TetR family.
  
     0.650
SMG24054.1
DNA-binding transcriptional regulator, MarR family.
  
     0.585
SMG44673.1
Transcriptional regulator, TetR family; Manually curated.
  
     0.569
SMG40873.1
NADPH:quinone reductase.
       0.566
SMG45337.1
Transcriptional regulator, TetR family.
  
     0.551
SMG13429.1
Transcriptional regulator, TetR family.
  
     0.506
SMG27633.1
Methyltransferase domain-containing protein.
  
     0.483
SMG43806.1
Transcriptional regulator, TetR family.
  
     0.479
SMG34482.1
Transcriptional regulator, TetR family.
  
     0.461
SMG23960.1
Helix-turn-helix domain-containing protein.
  
     0.433
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.