STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG41290.1Transcriptional regulator, MarR family. (150 aa)    
Predicted Functional Partners:
SMG27593.1
Predicted arabinose efflux permease, MFS family; Manually curated.
 
     0.773
SMG41284.1
histidyl-tRNA synthetase; Manually curated; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.714
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.704
SMG41279.1
XTP/dITP diphosphohydrolase.
       0.704
SMG41295.1
Drug resistance transporter, EmrB/QacA subfamily; Manually curated; Belongs to the major facilitator superfamily.
       0.511
SMG41300.1
Transcriptional regulator, MarR family.
       0.511
SMG41272.1
Hypothetical protein.
       0.502
SMG18152.1
IPT/TIG domain-containing protein.
  
     0.487
SMG28306.1
Transcriptional regulatory protein, C terminal.
  
     0.485
SMG31419.1
Hypothetical protein.
  
     0.435
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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