STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG41555.1Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (331 aa)    
Predicted Functional Partners:
SMG49657.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
  
    0.771
SMG26386.1
Transcriptional regulator, HxlR family.
   
    0.745
SMG38683.1
NAD-dependent protein deacetylase, SIR2 family.
   
    0.734
SMG28824.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.711
SMG45065.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
    
  0.569
SMG12182.1
Transcriptional regulator, AraC family with amidase-like domain.
 
  
 
0.566
SMG23878.1
Hypothetical protein.
   
    0.565
SMG28260.1
Iron (metal) dependent repressor, DtxR family.
   
    0.565
SMG41572.1
uroporphyrinogen-III synthase.
       0.559
SMG43829.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
   
    0.551
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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