STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG41634.1MFS/sugar transport protein. (420 aa)    
Predicted Functional Partners:
SMG41632.1
Transcriptional regulator, TetR family.
 
    0.851
SMG41638.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
    0.835
SMG41642.1
FAD-linked oxidoreductase.
       0.779
SMG41650.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
      0.778
SMG41655.1
Hypothetical protein.
       0.718
SMG41661.1
LemA protein.
       0.508
SMG41630.1
Hypothetical protein.
       0.488
htpX
Heat shock protein. Metallo peptidase. MEROPS family M48B; Belongs to the peptidase M48B family.
       0.476
SMG12527.1
Hypothetical protein.
  
     0.431
SMG18976.1
Predicted oxidoreductase.
  
     0.404
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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