STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG43843.1Zinc/manganese transport system substrate-binding protein. (323 aa)    
Predicted Functional Partners:
SMG43833.1
Zinc/manganese transport system permease protein.
 
 
 0.996
SMG43838.1
Zinc/manganese transport system ATP-binding protein.
  
  0.993
SMG44207.1
Hypothetical protein.
  
 
 0.941
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.822
SMG43829.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.773
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.759
SMG45160.1
Cobalamin synthesis protein cobW C-terminal domain-containing protein.
  
  
 0.755
SMG23878.1
Hypothetical protein.
  
 
 0.592
SMG28260.1
Iron (metal) dependent repressor, DtxR family.
  
 
 0.592
SMG32013.1
Iron (metal) dependent repressor, DtxR family.
  
 
 0.559
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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