STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG47910.1Homodimeric dihydroxyacetone kinase. (588 aa)    
Predicted Functional Partners:
SMG39031.1
Phosphocarrier protein HPr /dihydroxyacetone kinase DhaM subunit.
 
 0.946
SMG47908.1
Ribose 5-phosphate isomerase B.
 
  
  0.920
SMG42629.1
DNA-binding transcriptional regulator LsrR, DeoR family.
   
  0.820
SMG39037.1
Dihydroxyacetone kinase DhaL subunit.
  
 
0.751
SMG41107.1
Sugar phosphate isomerase/epimerase.
  
  0.724
SMG47891.1
Sugar phosphate isomerase/epimerase.
  
  0.704
SMG40953.1
Triosephosphate isomerase.
 
  
 0.688
SMG40945.1
Ribose 5-phosphate isomerase B.
 
  
  0.660
SMG29552.1
GAF domain-containing protein.
    
   0.636
SMG31276.1
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.629
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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