STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG47921.1MFS transporter, putative metabolite:H+ symporter. (492 aa)    
Predicted Functional Partners:
SMG47923.1
NitT/TauT family transport system substrate-binding protein; Non-canonical start codon; manually curated.
 
     0.870
SMG47925.1
Ornithine cyclodeaminase/alanine dehydrogenase.
 
    0.732
SMG48020.1
MFS transporter, SP family, inositol transporter.
  
     0.725
SMG47933.1
Allantoin racemase.
       0.693
SMG47935.1
Transcriptional regulator, GntR family.
 
    0.671
SMG38355.1
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.458
SMG41076.1
MFS transporter, MHS family, metabolite:H+ symporter.
  
     0.435
SMG47919.1
SseB protein N-terminal domain-containing protein.
       0.412
SMG40938.1
Sugar phosphate permease.
  
  
  0.404
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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