STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG49476.1Protein of unknown function. (126 aa)    
Predicted Functional Partners:
SMG37378.1
Protein of unknown function; Manually curated.
  
     0.712
SMG49210.1
Cytochrome c oxidase subunit IV; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.668
SMG37234.1
Protein of unknown function.
  
     0.657
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.637
SMG49185.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
  
     0.609
SMG49334.1
YggT family protein.
 
     0.598
SMG49482.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
       0.597
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.585
SMG37030.1
PucR C-terminal helix-turn-helix domain-containing protein.
  
     0.543
mraZ
MraZ protein; Belongs to the MraZ family.
       0.532
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
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