STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG49603.1Inner membrane component of T3SS domain-containing protein. (158 aa)    
Predicted Functional Partners:
SMG10512.1
Serine/threonine-protein kinase PknG.
    
 
 0.999
SMG35291.1
2-oxoglutarate dehydrogenase E1 component.
    
 
 0.999
SMG48323.1
Serine/threonine protein kinase.
 
 
 
 0.999
SMG49497.1
Serine/threonine protein kinase.
 
 
 
 0.999
SMG14338.1
Serine/threonine protein kinase.
 
 0.941
SMG48319.1
Serine/threonine protein kinase.
  
 
 
 0.941
SMG49577.1
MerR family regulatory protein.
 
    0.914
SMG30401.1
Serine/threonine protein kinase.
  
 
 
 0.900
SMG45762.1
Serine/threonine protein kinase.
  
 
 
 0.893
SMG44653.1
NPCBM/NEW2 domain-containing protein.
 
 
 
 0.878
Your Current Organism:
Agreia pratensis
NCBI taxonomy Id: 150121
Other names: A. pratensis, Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, DSM 14246, JCM 12145, LMG 21000, LMG:21000, NBRC 103054, Subtercola pratensis, Subtercola pratensis Behrendt et al. 2002, Subtercola sp. P229/10, VKM Ac-2510, strain P 229/10
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.