STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQX79782.1Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)    
Predicted Functional Partners:
AQX79783.1
FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.954
AQX79780.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.895
AQX79781.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.811
AQX79414.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.669
AQX80215.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
AQX79784.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.513
AQX79779.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.495
htpX
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.
       0.472
AQX79850.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
AQX80374.1
SGNH hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
Your Current Organism:
Plantibacter flavus
NCBI taxonomy Id: 150123
Other names: Clavibacter sp. P297/02, DSM 14012, JCM 12144, LMG 19919, LMG:19919, NBRC 103081, P. flavus, Plantibacter flavus Behrendt et al. 2002, VKM Ac-2504, strain P 297/02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.