STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQX80956.1RbsD or FucU transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family. (137 aa)    
Predicted Functional Partners:
AQX80957.1
Aldehyde oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
AQX80955.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
AQX80871.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.628
AQX81646.1
Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.576
AQX80958.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.544
BWO91_03485
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.510
AQX80959.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
AQX80960.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
AQX80961.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
Your Current Organism:
Plantibacter flavus
NCBI taxonomy Id: 150123
Other names: Clavibacter sp. P297/02, DSM 14012, JCM 12144, LMG 19919, LMG:19919, NBRC 103081, P. flavus, Plantibacter flavus Behrendt et al. 2002, VKM Ac-2504, strain P 297/02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.