STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EW15_0963Error-prone repair protein UmuD; Alternative locus ID: PMIT0801_0966; Belongs to the peptidase S24 family. (148 aa)    
Predicted Functional Partners:
EW15_0962
Error-prone; Alternative locus ID: PMIT0801_0965; lesion bypass DNA polymerase V (UmuC).
 
 
 0.986
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.887
rlmH
LSU m3Psi1915 methyltransferase RlmH ybeA; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.696
EW15_0961
Putative Serine hydroxymethyltransferase; Alternative locus ID: PMIT0801_0964.
       0.651
EW15_0965
Hypothetical protein; Alternative locus ID: PMIT0801_0968; FIG00941205: hypothetical protein.
       0.617
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.569
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.562
EW15_0968
Hypothetical protein; Alternative locus ID: PMIT0801_0971; FIG00940836: hypothetical protein.
       0.536
EW15_2284
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.534
EW15_0350
C-terminal domain of CinA type S; Alternative locus ID: PMIT0801_0350; Protein Implicated in DNA repair function with RecA and MutS; Belongs to the CinA family.
     
 0.427
Your Current Organism:
Prochlorococcus sp. MIT0801
NCBI taxonomy Id: 1501269
Other names: P. sp. MIT 0801, Prochlorococcus sp. MIT 0801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.