STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EW15_1941SSU ribosomal protein S20p; Alternative locus ID: PMIT0801_1944. (62 aa)    
Predicted Functional Partners:
rpmF
LSU ribosomal protein L32p; Alternative locus ID: PMIT0801_1055; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.998
EW15_0994
LSU ribosomal protein L28p; Alternative locus ID: PMIT0801_0997.
  
 
 0.996
rplU
LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.996
rpmH
LSU ribosomal protein L34p; Alternative locus ID: PMIT0801_1715; Belongs to the bacterial ribosomal protein bL34 family.
 
 
 0.995
rplM
LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.995
rpsO
SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.994
EW15_1763
SSU ribosomal protein S16p; Alternative locus ID: PMIT0801_1766.
  
 
 0.994
rpmA
LSU ribosomal protein L27p; Alternative locus ID: PMIT0801_1832; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.994
rpsU
SSU ribosomal protein S21p; Alternative locus ID: PMIT0801_2000; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.994
rpmE
LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
  
 
 0.994
Your Current Organism:
Prochlorococcus sp. MIT0801
NCBI taxonomy Id: 1501269
Other names: P. sp. MIT 0801, Prochlorococcus sp. MIT 0801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.