STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ94271.1TonB-dependent Receptor Plug Domain. (925 aa)    
Predicted Functional Partners:
SDZ94213.1
Hypothetical protein.
 
    0.951
SDZ94239.1
Protein of unknown function.
 
     0.948
SDZ94289.1
Hypothetical protein.
 
     0.938
SEA19031.1
Protein TonB.
  
  0.615
SEA59074.1
Outer membrane transport energization protein TonB.
  
  0.608
SEA85182.1
Outer membrane transport energization protein TonB.
  
  0.597
SEA40538.1
TonB protein C-terminal.
  
  0.590
SEA90532.1
Protein TonB.
   
  0.527
SEA92927.1
Starch-binding associating with outer membrane.
  
 
   0.511
SEB07185.1
Conserved repeat domain-containing protein/gliding motility-associated C-terminal domain-containing protein.
  
 
   0.508
Your Current Organism:
Flavobacterium gillisiae
NCBI taxonomy Id: 150146
Other names: ACAM 601, DSM 22376, F. gillisiae, Flavobacterium gillisiae McCammon and Bowman 2000, Flavobacterium sp. IC001, strain IC001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.