STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA01290.1Peptide/nickel transport system substrate-binding protein. (538 aa)    
Predicted Functional Partners:
SEA69989.1
Peptide/nickel transport system permease protein.
 
 0.981
SEA61503.1
Peptide/nickel transport system permease protein.
 0.975
SEA17609.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.938
SEA01257.1
Hypothetical protein.
       0.773
SEA01321.1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
       0.608
SDZ84932.1
Hypothetical protein.
  
     0.547
SEA60733.1
Hypothetical protein.
  
     0.514
SEA14011.1
Hypothetical protein.
 
  
  0.507
SEA99439.1
Choline/glycine/proline betaine transport protein; Belongs to the BCCT transporter (TC 2.A.15) family.
    
  0.505
secD
Protein translocase subunit secF /protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
    
  0.500
Your Current Organism:
Flavobacterium gillisiae
NCBI taxonomy Id: 150146
Other names: ACAM 601, DSM 22376, F. gillisiae, Flavobacterium gillisiae McCammon and Bowman 2000, Flavobacterium sp. IC001, strain IC001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.