Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ85425.1 | SEA04192.1 | SAMN05443667_10126 | SAMN05443667_101717 | Hypothetical protein. | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | 0.649 |
SDZ85425.1 | SEA20500.1 | SAMN05443667_10126 | SAMN05443667_102316 | Hypothetical protein. | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.691 |
SEA04192.1 | SDZ85425.1 | SAMN05443667_101717 | SAMN05443667_10126 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | Hypothetical protein. | 0.649 |
SEA04192.1 | SEA20500.1 | SAMN05443667_101717 | SAMN05443667_102316 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | 0.736 |
SEA04192.1 | SEA21258.1 | SAMN05443667_101717 | SAMN05443667_102344 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | Hypothetical protein. | 0.682 |
SEA04192.1 | SEA41633.1 | SAMN05443667_101717 | SAMN05443667_104130 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | Sulfide:quinone oxidoreductase. | 0.860 |
SEA04192.1 | SEA66520.1 | SAMN05443667_101717 | SAMN05443667_1075 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | Rubredoxin. | 0.724 |
SEA04192.1 | SEA66544.1 | SAMN05443667_101717 | SAMN05443667_1076 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.963 |
SEA04192.1 | SEA66981.1 | SAMN05443667_101717 | SAMN05443667_10726 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | Nitrite reductase (NADH) large subunit. | 0.882 |
SEA04192.1 | SEA67700.1 | SAMN05443667_101717 | SAMN05443667_10754 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | Pyridine nucleotide-disulphide oxidoreductase. | 0.863 |
SEA04192.1 | SEA78186.1 | SAMN05443667_101717 | SAMN05443667_108213 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | Glutamate synthase (NADH) large subunit. | 0.906 |
SEA04192.1 | SEA85305.1 | SAMN05443667_101717 | SAMN05443667_11025 | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | YHS domain-containing protein. | 0.649 |
SEA20500.1 | SDZ85425.1 | SAMN05443667_102316 | SAMN05443667_10126 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Hypothetical protein. | 0.691 |
SEA20500.1 | SEA04192.1 | SAMN05443667_102316 | SAMN05443667_101717 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. | 0.736 |
SEA20500.1 | SEA41633.1 | SAMN05443667_102316 | SAMN05443667_104130 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Sulfide:quinone oxidoreductase. | 0.953 |
SEA20500.1 | SEA66520.1 | SAMN05443667_102316 | SAMN05443667_1075 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Rubredoxin. | 0.902 |
SEA20500.1 | SEA66544.1 | SAMN05443667_102316 | SAMN05443667_1076 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.897 |
SEA20500.1 | SEA66981.1 | SAMN05443667_102316 | SAMN05443667_10726 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Nitrite reductase (NADH) large subunit. | 0.707 |
SEA20500.1 | SEA67700.1 | SAMN05443667_102316 | SAMN05443667_10754 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Pyridine nucleotide-disulphide oxidoreductase. | 0.707 |
SEA20500.1 | SEA78186.1 | SAMN05443667_102316 | SAMN05443667_108213 | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. | Glutamate synthase (NADH) large subunit. | 0.888 |
page 1 of 3