STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA04192.1Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. (376 aa)    
Predicted Functional Partners:
SEA66544.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.963
SEA78186.1
Glutamate synthase (NADH) large subunit.
  
 
 0.906
SEA66981.1
Nitrite reductase (NADH) large subunit.
 
 0.882
SEA67700.1
Pyridine nucleotide-disulphide oxidoreductase.
  
 0.863
SEA41633.1
Sulfide:quinone oxidoreductase.
  
 0.860
SEA20500.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.736
SEA66520.1
Rubredoxin.
  
 
 0.724
SEA21258.1
Hypothetical protein.
   
    0.682
SDZ85425.1
Hypothetical protein.
   
  0.649
SEA85305.1
YHS domain-containing protein.
   
  0.649
Your Current Organism:
Flavobacterium gillisiae
NCBI taxonomy Id: 150146
Other names: ACAM 601, DSM 22376, F. gillisiae, Flavobacterium gillisiae McCammon and Bowman 2000, Flavobacterium sp. IC001, strain IC001
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