STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA44348.1OstA-like protein. (553 aa)    
Predicted Functional Partners:
SEA02308.1
Tetratricopeptide repeat-containing protein.
 
   
 0.758
SEA61927.1
LPS export ABC transporter protein LptC.
 
 
 0.711
SEA90811.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
   
 0.674
SEA76403.1
Protein of unknown function.
  
     0.673
SEA90840.1
Hypothetical protein.
  
    0.669
SEA44399.1
Acetylornithine/succinyldiaminopimelate/putresci ne aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.638
SEA44421.1
Tetratricopeptide repeat-containing protein.
 
  
 0.621
SEA90697.1
Tetratricopeptide repeat-containing protein.
 
   
 0.618
lgt-2
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.610
SDZ95124.1
Tetratricopeptide repeat-containing protein.
  
     0.598
Your Current Organism:
Flavobacterium gillisiae
NCBI taxonomy Id: 150146
Other names: ACAM 601, DSM 22376, F. gillisiae, Flavobacterium gillisiae McCammon and Bowman 2000, Flavobacterium sp. IC001, strain IC001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.