STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA53249.1Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains. (210 aa)    
Predicted Functional Partners:
SEA53225.1
DoxX-like family protein.
       0.773
SEA18946.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
    0.769
SEA53201.1
Transcriptional regulator, HxlR family.
  
  
 0.668
SDZ91862.1
Uncharacterized Fe-S cluster protein YjdI.
   
    0.621
SEA50645.1
Luciferase family oxidoreductase, group 1.
    
  0.602
SDZ91923.1
Hypothetical protein.
   
    0.592
SEA95595.1
Hypothetical protein.
   
    0.592
SEA83219.1
NADP-dependent alcohol dehydrogenase.
  
  
 0.584
SEA96078.1
Hypothetical protein.
   
    0.583
SEA94955.1
Putative ATP-dependent endonuclease of the OLD family.
   
    0.582
Your Current Organism:
Flavobacterium gillisiae
NCBI taxonomy Id: 150146
Other names: ACAM 601, DSM 22376, F. gillisiae, Flavobacterium gillisiae McCammon and Bowman 2000, Flavobacterium sp. IC001, strain IC001
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