STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA75500.1ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. (641 aa)    
Predicted Functional Partners:
SEA43882.1
Superfamily II DNA and RNA helicase.
  
  
 
0.926
SEA53271.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
  
  
 
0.913
SEA04234.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
 
 0.884
SEA04260.1
Peptidylprolyl isomerase.
 
 0.883
SEA95132.1
ATP-dependent DNA helicase RecQ.
  
 
0.882
SEA77662.1
Peptidyl-prolyl cis-trans isomerase A (cyclophilin A).
 
 0.880
SEA89660.1
ATP-dependent DNA helicase RecQ.
  
 
0.875
SEA01083.1
DEAD/DEAH box helicase.
  
  
  0.856
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
   
 0.806
nnrD
yjeF C-terminal region, hydroxyethylthiazole kinase-related; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
  
 0.798
Your Current Organism:
Flavobacterium gillisiae
NCBI taxonomy Id: 150146
Other names: ACAM 601, DSM 22376, F. gillisiae, Flavobacterium gillisiae McCammon and Bowman 2000, Flavobacterium sp. IC001, strain IC001
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