STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA96140.1Hypothetical protein. (291 aa)    
Predicted Functional Partners:
SEA96125.1
tRNA_anti-like.
 
     0.940
SEA96110.1
Hypothetical protein.
 
     0.904
SEA96095.1
YceI-like domain-containing protein.
 
     0.885
SEA96160.1
YceI-like domain-containing protein.
 
     0.800
SEA84981.1
WD40-like Beta Propeller Repeat.
  
 
 0.503
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.447
SDZ84910.1
WD40-like Beta Propeller Repeat.
   
 
 0.438
SEB07136.1
WD40-like Beta Propeller Repeat.
   
 
 0.438
SEB07151.1
Hypothetical protein.
   
 
 0.438
SEB07160.1
Hypothetical protein.
   
 
 0.438
Your Current Organism:
Flavobacterium gillisiae
NCBI taxonomy Id: 150146
Other names: ACAM 601, DSM 22376, F. gillisiae, Flavobacterium gillisiae McCammon and Bowman 2000, Flavobacterium sp. IC001, strain IC001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.