STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB01967.1Tetratricopeptide repeat-containing protein. (559 aa)    
Predicted Functional Partners:
SEB01983.1
Histone H1-like protein Hc1.
 
     0.620
SEA78186.1
Glutamate synthase (NADH) large subunit.
    
  0.597
SEA25435.1
Hypothetical protein.
  
     0.566
SEA97382.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
    0.562
SEA87591.1
SusD family protein.
  
     0.556
SEA25514.1
RagB/SusD domain-containing protein.
  
     0.542
SEB02183.1
RagB/SusD domain-containing protein.
  
     0.538
SEB02219.1
Uncharacterized membrane protein YphA, DoxX/SURF4 family.
  
     0.538
SEB00769.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.538
SEB00757.1
SusD family protein.
  
     0.534
Your Current Organism:
Flavobacterium gillisiae
NCBI taxonomy Id: 150146
Other names: ACAM 601, DSM 22376, F. gillisiae, Flavobacterium gillisiae McCammon and Bowman 2000, Flavobacterium sp. IC001, strain IC001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.