Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ87440.1 | SEA30078.1 | SAMN05443667_101115 | SAMN05443667_103169 | Hypothetical protein. | Exonuclease SbcC. | 0.466 |
SDZ87440.1 | SEA98614.1 | SAMN05443667_101115 | SAMN05443667_11436 | Hypothetical protein. | Sulfate permease, SulP family. | 0.850 |
SDZ87440.1 | SEA99375.1 | SAMN05443667_101115 | SAMN05443667_11495 | Hypothetical protein. | Sulfate permease, MFS superfamily. | 0.850 |
SDZ87440.1 | SEB04149.1 | SAMN05443667_101115 | SAMN05443667_11690 | Hypothetical protein. | Calcineurin-like phosphoesterase. | 0.845 |
SDZ87440.1 | SEB06367.1 | SAMN05443667_101115 | SAMN05443667_1195 | Hypothetical protein. | DNA repair exonuclease SbcCD ATPase subunit. | 0.466 |
SDZ87440.1 | polA | SAMN05443667_101115 | SAMN05443667_101102 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.592 |
SDZ87440.1 | recA | SAMN05443667_101115 | SAMN05443667_102252 | Hypothetical protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.574 |
SEA30078.1 | SDZ87440.1 | SAMN05443667_103169 | SAMN05443667_101115 | Exonuclease SbcC. | Hypothetical protein. | 0.466 |
SEA30078.1 | SEA50234.1 | SAMN05443667_103169 | SAMN05443667_10531 | Exonuclease SbcC. | ATP-dependent DNA helicase RecQ. | 0.624 |
SEA30078.1 | SEA89660.1 | SAMN05443667_103169 | SAMN05443667_11148 | Exonuclease SbcC. | ATP-dependent DNA helicase RecQ. | 0.624 |
SEA30078.1 | SEA95132.1 | SAMN05443667_103169 | SAMN05443667_11317 | Exonuclease SbcC. | ATP-dependent DNA helicase RecQ. | 0.624 |
SEA30078.1 | SEB04149.1 | SAMN05443667_103169 | SAMN05443667_11690 | Exonuclease SbcC. | Calcineurin-like phosphoesterase. | 0.980 |
SEA30078.1 | polA | SAMN05443667_103169 | SAMN05443667_101102 | Exonuclease SbcC. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.980 |
SEA30078.1 | recA | SAMN05443667_103169 | SAMN05443667_102252 | Exonuclease SbcC. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.769 |
SEA50234.1 | SEA30078.1 | SAMN05443667_10531 | SAMN05443667_103169 | ATP-dependent DNA helicase RecQ. | Exonuclease SbcC. | 0.624 |
SEA50234.1 | SEA95132.1 | SAMN05443667_10531 | SAMN05443667_11317 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase RecQ. | 0.704 |
SEA50234.1 | SEB04149.1 | SAMN05443667_10531 | SAMN05443667_11690 | ATP-dependent DNA helicase RecQ. | Calcineurin-like phosphoesterase. | 0.743 |
SEA50234.1 | SEB06367.1 | SAMN05443667_10531 | SAMN05443667_1195 | ATP-dependent DNA helicase RecQ. | DNA repair exonuclease SbcCD ATPase subunit. | 0.624 |
SEA50234.1 | polA | SAMN05443667_10531 | SAMN05443667_101102 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.962 |
SEA50234.1 | recA | SAMN05443667_10531 | SAMN05443667_102252 | ATP-dependent DNA helicase RecQ. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.890 |
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