STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA54554.1HAMP domain-containing protein. (468 aa)    
Predicted Functional Partners:
SFA42845.1
EAL domain-containing protein.
 
 0.999
SFA52118.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.994
SFA52057.1
Signal transduction histidine kinase.
 
0.988
SFA54550.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.987
SFA49872.1
Two-component system, OmpR family, response regulator VicR.
  0.984
SFA55512.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.983
SFA41312.1
Two-component system, OmpR family, response regulator ResD.
  0.949
SFA48920.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
  0.947
SFA40944.1
Chemotaxis protein methyltransferase CheR.
   
 0.933
SFA47685.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.933
Your Current Organism:
Anoxybacillus pushchinoensis
NCBI taxonomy Id: 150248
Other names: A. pushchinoensis, ATCC 700785, Anoxybacillus pushchinensis, Anoxybacillus pushchinoensis corrig. Pikuta et al. 2000 emend. Pikuta et al. 2003, Bacillus sp. k-1, Bacillus sp. strain k-1, DSM 12423, VKM B-2193, strain K1
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