STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA54727.1GerA spore germination protein. (487 aa)    
Predicted Functional Partners:
SFA54730.1
Germination protein, Ger(x)C family.
  
 0.946
SFA54724.1
Spore germination protein (amino acid permease).
  
 0.942
SFA41491.1
Stage V sporulation protein AD.
  
    0.783
SFA58389.1
Stage V sporulation protein AD.
  
    0.780
SFA58394.1
Stage V sporulation protein AC.
  
    0.777
SFA58384.1
Stage V sporulation protein AE.
  
    0.773
SFA51369.1
Transcriptional regulator, AbrB family.
  
     0.772
SFA53479.1
RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.772
SFA41008.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.771
SFA41753.1
Stage IV sporulation protein B.
  
     0.771
Your Current Organism:
Anoxybacillus pushchinoensis
NCBI taxonomy Id: 150248
Other names: A. pushchinoensis, ATCC 700785, Anoxybacillus pushchinensis, Anoxybacillus pushchinoensis corrig. Pikuta et al. 2000 emend. Pikuta et al. 2003, Bacillus sp. k-1, Bacillus sp. strain k-1, DSM 12423, VKM B-2193, strain K1
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