SFI72857.1 protein (Paenibacillus sp. UNC496MF)

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second shell of interactors

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Predicted Interactions

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Score

SFI72857.1

ATP-binding cassette, subfamily F, uup. (643 aa)

Predicted Functional Partners:

rplU

0.828

rpsO

0.826

rpsC

0.825

rplD

0.821

rplC

0.819

rplT

0.816

rpmD

0.814

rplM

0.814

rpmF

0.813

rpmA

0.813

Your Current Organism:

Paenibacillus sp. UNC496MF

NCBI taxonomy Id: 1502753
Other names: P. sp. UNC496MF

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI72857.1	rplC	SAMN02799624_01910	SAMN02799624_06459	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.819
SFI72857.1	rplD	SAMN02799624_01910	SAMN02799624_06460	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.821
SFI72857.1	rplM	SAMN02799624_01910	SAMN02799624_06487	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.814
SFI72857.1	rplT	SAMN02799624_01910	SAMN02799624_02961	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.816
SFI72857.1	rplU	SAMN02799624_01910	SAMN02799624_03260	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.828
SFI72857.1	rpmA	SAMN02799624_01910	SAMN02799624_03258	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.813
SFI72857.1	rpmD	SAMN02799624_01910	SAMN02799624_06475	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L30.	0.814
SFI72857.1	rpmF	SAMN02799624_01910	SAMN02799624_01279	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.813
SFI72857.1	rpsC	SAMN02799624_01910	SAMN02799624_06465	ATP-binding cassette, subfamily F, uup.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.825
SFI72857.1	rpsO	SAMN02799624_01910	SAMN02799624_01190	ATP-binding cassette, subfamily F, uup.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.826
rplC	SFI72857.1	SAMN02799624_06459	SAMN02799624_01910	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATP-binding cassette, subfamily F, uup.	0.819
rplC	rplD	SAMN02799624_06459	SAMN02799624_06460	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN02799624_06459	SAMN02799624_06487	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplT	SAMN02799624_06459	SAMN02799624_02961	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplC	rplU	SAMN02799624_06459	SAMN02799624_03260	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.995
rplC	rpmA	SAMN02799624_06459	SAMN02799624_03258	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplC	rpmD	SAMN02799624_06459	SAMN02799624_06475	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L30.	0.999
rplC	rpmF	SAMN02799624_06459	SAMN02799624_01279	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.988
rplC	rpsC	SAMN02799624_06459	SAMN02799624_06465	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsO	SAMN02799624_06459	SAMN02799624_01190	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.995