STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FG94_01129Hypothetical protein. (151 aa)    
Predicted Functional Partners:
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.822
parE
DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
   
 
 0.822
mltD
Membrane-bound lytic murein transglycosylase D.
   
 
 0.802
FG94_01130
Hypothetical protein.
       0.798
FG94_01131
Hypothetical protein.
       0.779
FG94_00890
Putative signal peptide containing protein.
    
 0.759
FG94_01132
Hypothetical protein.
       0.758
FG94_01133
Iron-sulfur cluster-binding protein.
       0.758
FG94_01127
Hypothetical protein.
       0.733
FG94_01128
Formate dehydrogenase, gamma subunit.
       0.725
Your Current Organism:
Massilia sp. LC238
NCBI taxonomy Id: 1502852
Other names: M. sp. LC238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.