sigH protein (Gottschalkia purinilytica) - STRING interaction network

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Score

sigH

RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family. (215 aa)

Predicted Functional Partners:

KNF08001.1

0.762

rpoC

0.735

rpoB

0.721

KNF08013.1

0.709

KNF07500.1

0.685

KNF08000.1

0.680

mrnC

0.616

cheR

0.596

rpoA

0.559

rpoZ

0.558

Your Current Organism:

Gottschalkia purinilytica

NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KNF07500.1	sigH	CLPU_16c00560	CLPU_10c00560	Hypothetical protein.	RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family.	0.685
KNF08000.1	KNF08001.1	CLPU_10c00540	CLPU_10c00550	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Protein of unknown function DUF901; Hypothetical protein DUF901.	0.971
KNF08000.1	mrnC	CLPU_10c00540	CLPU_10c00520	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	0.941
KNF08000.1	sigH	CLPU_10c00540	CLPU_10c00560	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family.	0.680
KNF08001.1	KNF08000.1	CLPU_10c00550	CLPU_10c00540	Protein of unknown function DUF901; Hypothetical protein DUF901.	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.971
KNF08001.1	mrnC	CLPU_10c00550	CLPU_10c00520	Protein of unknown function DUF901; Hypothetical protein DUF901.	Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	0.963
KNF08001.1	sigH	CLPU_10c00550	CLPU_10c00560	Protein of unknown function DUF901; Hypothetical protein DUF901.	RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family.	0.762
KNF08013.1	rpoA	CLPU_10c00680	CLPU_10c01020	LSU ribosomal protein L7AE.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.520
KNF08013.1	rpoB	CLPU_10c00680	CLPU_10c00660	LSU ribosomal protein L7AE.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.720
KNF08013.1	rpoC	CLPU_10c00680	CLPU_10c00670	LSU ribosomal protein L7AE.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.730
KNF08013.1	rpoZ	CLPU_10c00680	CLPU_5c00420	LSU ribosomal protein L7AE.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.453
KNF08013.1	sigH	CLPU_10c00680	CLPU_10c00560	LSU ribosomal protein L7AE.	RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family.	0.709
cheR	sigH	CLPU_17c00730	CLPU_10c00560	Chemotaxis protein methyltransferase CheR.	RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family.	0.596
mrnC	KNF08000.1	CLPU_10c00520	CLPU_10c00540	Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.941
mrnC	KNF08001.1	CLPU_10c00520	CLPU_10c00550	Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	Protein of unknown function DUF901; Hypothetical protein DUF901.	0.963
mrnC	sigH	CLPU_10c00520	CLPU_10c00560	Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family.	0.616
rpoA	KNF08013.1	CLPU_10c01020	CLPU_10c00680	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	LSU ribosomal protein L7AE.	0.520
rpoA	rpoB	CLPU_10c01020	CLPU_10c00660	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	CLPU_10c01020	CLPU_10c00670	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoZ	CLPU_10c01020	CLPU_5c00420	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.997