STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF07713.1uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (287 aa)    
Predicted Functional Partners:
hemD
Porphyrin biosynthesis protein HemD.
  
 
 0.902
mtbC2-2
Dimethylamine corrinoid protein 2.
 
 
 0.844
mtbC2
Dimethylamine corrinoid protein 2.
 
 
 0.815
KNF08393.1
Ferredoxin.
    0.780
hemE2
Uroporphyrinogen decarboxylase HemE; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.775
mtbC
Dimethylamine corrinoid protein 1.
 
 
 0.775
KNF09110.1
CobW/P47K family protein.
  
 0.747
hemC
Porphobilinogen deaminase HemC; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.664
hemL2
Glutamate-1-semialdehyde 2,1-aminomutase 2.
  
 
 0.639
mtbA-2
methylcobamide:CoM methyltransferase MtbA; Belongs to the uroporphyrinogen decarboxylase family.
 
  
 
0.549
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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