STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaAFlp pilus assembly protein, protease CpaA. (95 aa)    
Predicted Functional Partners:
KNF07382.1
Tfp pilus assembly protein, ATPase.
 
  
 0.866
KNF07385.1
Hypothetical protein.
  
  
 0.853
tapC
Type IV pilus assembly protein TapC.
 
  
 0.844
tapB
Type IV pilus assembly protein TapB.
 
 
 0.821
KNF09370.1
DNA internalization-like competence protein ComEC/Rec2.
 
  
 0.754
KNF07384.1
Hypothetical protein.
     
 0.753
KNF07383.1
Hypothetical protein.
     
 0.730
dprA
DNA protecting protein DprA.
 
  
 0.718
pilT
Twitching mobility protein PilT.
 
   
 0.671
KNF09428.1
Hypothetical protein.
  
  
 0.666
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.