STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIADStage III sporulation protein AD. (128 aa)    
Predicted Functional Partners:
spoIIIAE
Stage III sporulation protein AE.
 
  
 0.994
spoIIIAC
Stage III sporulation protein AC.
 
  
 0.993
spoIIIAF
Stage III sporulation protein AF.
 
  
 0.992
spoIIIAB
Stage III sporulation protein AB.
 
  
 0.981
spoIIIAA
Stage III sporulation protein AA.
 
  
 0.964
spoIIIAG
Stage III sporulation protein AG.
 
  
 0.961
spoIIIAH
Stage III sporulation protein AH.
 
  
 0.925
yqfC
Sporulation protein YqfC.
  
  
 0.868
spoIVA
Stage IV sporulation protein A.
  
    0.858
spoIIM
Stage II sporulation protein M.
  
  
 0.850
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.