STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF09852.1Phage regulatory protein, rha family. (240 aa)    
Predicted Functional Partners:
KNF08419.1
Phage anti-repressor protein.
     0.948
KNF09322.1
Putative phage-encoded protein.
     0.855
KNF09853.1
MerR HTH family regulatory protein.
       0.751
KNF09851.1
DNA binding domain, excisionase family.
       0.733
KNF09854.1
Putative transcriptional regulator.
       0.698
KNF09849.1
Hypothetical protein.
 
     0.627
KNF09838.1
Holliday junction resolvase.
 
     0.567
KNF08092.1
Helix-turn-helix domain-containing protein.
 
     0.507
KNF09850.1
Hypothetical protein.
       0.496
KNF09855.1
Putative transcriptional regulator.
       0.453
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.