STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVDStage V sporulation protein D. (564 aa)    
Predicted Functional Partners:
spoVE1
Stage V sporulation protein E; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.918
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.918
spoVE
Stage V sporulation protein E; Belongs to the SEDS family.
 
 0.894
mrdA
Penicillin-binding protein 2.
  
  
0.861
pbpA2
Penicillin-binding protein 1A.
 
 
 0.844
mrcA
Penicillin-binding protein 1A.
 
 0.834
KNF09919.1
Putative division protein, FtsQ-type; Essential cell division protein.
  
 
 0.807
mreC
Rod shape-determining protein, subunit C; Involved in formation and maintenance of cell shape.
 
 
 0.801
KNF09516.1
Cell cycle protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family.
 
 0.785
KNF09461.1
Cell shape determining protein, MreB/Mrl family.
 
 
 
 0.730
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.