STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNF09888.1PRC-barrel domain-containing protein. (178 aa)    
Predicted Functional Partners:
ytxC
Sporulation protein YtxC.
  
     0.734
KNF07431.1
Protein of unknown function DUF2953; Hypothetical protein DUF2953.
  
     0.711
KNF09749.1
Hypothetical protein.
  
     0.650
KNF09887.1
Hypothetical protein.
       0.621
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.606
KNF08913.1
LysM domain-containing protein.
  
     0.590
KNF09886.1
Putative permease.
 
     0.583
KNF07139.1
Hypothetical protein.
  
     0.569
gerM
Spore germination protein GerM.
  
     0.563
KNF07400.1
Protein of unknown function DUF322; Hypothetical protein DUF322.
  
     0.537
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.