STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mutX8-oxo-dGTP diphosphatase MutX; Belongs to the Nudix hydrolase family. (152 aa)    
Predicted Functional Partners:
pyk
Pyruvate kinase Pyk; Belongs to the pyruvate kinase family.
    
  0.838
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.837
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
    
 0.814
nifJ-2
Pyruvate-flavodoxin oxidoreductase NifJ.
    
 0.814
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.801
metH4
Methionine synthase.
    
 0.717
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.717
KNF06998.1
Pyridoxamine 5'-phosphate oxidase-like protein, FMN-binding.
 
      0.699
tcdA
tRNA threonylcarbamoyladenosine dehydratase TcdA.
 
      0.692
ylmD
Laccase domain-containing protein YlmD; Belongs to the multicopper oxidase YfiH/RL5 family.
      0.600
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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