STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livF1High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF. (234 aa)    
Predicted Functional Partners:
KNF10027.1
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
  0.996
KNF07475.1
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
  0.985
livH1
High-affinity branched-chain amino acid ABC transporter system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
  
  0.972
livK1
ABC transporter branched-chain amino acid-binding protein LivK.
 
 
  0.919
livG1
High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG.
 
  
 
0.906
livH2
High-affinity branched-chain amino acid ABC transporter system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
  
  0.893
KNF08361.1
Hypothetical protein.
 
      0.869
livK2
ABC transporter branched-chain amino acid-binding protein LivK.
 
 
  0.865
KNF07746.1
ABC-type multidrug transport system, ATPase component.
 
     
0.824
KNF09665.1
ABC-type multidrug transport system, ATPase component.
 
    
0.631
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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