STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sDRShort-chain dehydrogenase/reductase SDR. (289 aa)    
Predicted Functional Partners:
KNF07693.1
Putative pyridoxal phosphate-dependent acyltransferase.
 
 0.959
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
    
 0.852
nifJ-2
Pyruvate-flavodoxin oxidoreductase NifJ.
    
 0.852
KNF07117.1
Threonine dehydrogenase/Zn-dependent dehydrogenase.
 
 0.832
pyk
Pyruvate kinase Pyk; Belongs to the pyruvate kinase family.
   
 0.824
sfrB
NADPH-Fe(3+) oxidoreductase subunit beta.
    
 0.810
fabD
Malonyl CoA-acyl carrier protein transacylase FabD.
 
 0.733
fabF
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.721
rnfB
Electron transport complex protein, subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
 0.698
metH4
Methionine synthase.
   
 
 0.670
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.