Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KNF10050.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
KNF10052.1
Protein of unknown function DUF2634; Hypothetical protein DUF2634.
 
 
 0.985
KNF10051.1
Hypothetical protein.
 
 
 0.982
xkdP
Phage-like element PBSX protein XkdP.
 
 
 0.975
KNF10056.1
Phage protein.
 
   0.963
KNF10059.1
Phage tail sheath protein.
 
 
 0.962
KNF10054.1
Hypothetical protein.
 
   0.961
KNF07169.1
Phage tail sheath protein.
 
 
 0.946
KNF07176.1
Protein of unknown function DUF2634; Hypothetical protein DUF2634.
 
 
 0.937
KNF08562.1
Lysozyme.
  
 
 0.929
KNF07177.1
Hypothetical protein.
 
 
 0.925
Your Current Organism:
Gottschalkia purinilytica
NCBI taxonomy Id: 1503
Other names: ATCC 33906, Clostridium purinilyticum, Clostridium purinolyticum, G. purinilytica, strain WA-1
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